Thread: glibc detected (when trying to get polezeros using rdseed)

Started: 2011-12-22 01:37:25
Last activity: 2011-12-22 23:26:42
Topics: SAC Help
Dear SAC-help:

I just downloaded rdseedv5.1 and tried to extract waveforms, response, and
PZ files for a file from IRIS. I got the error and behavior mentioned below
by Anne Deschamps. I have sac 101.5 installed (though the pre-release
version), with linux opensuse 11.3, 64-bit. I do know that it only happens
if you ask to produce polezero files -- for waveforms or response files, no
error.

The exit looks like this:

...
Writing IU.YSS.00.LHZ, 3600 samples (binary), starting 2004,361
00:55:50.7856 UT
*** glibc detected *** rdseed: free(): invalid pointer: 0x000000000043b845
***
======= Backtrace: =========
/lib64/libc.so.6(+0x73286)[0x7f10ed8d3286]
/lib64/libc.so.6(cfree+0x6c)[0x7f10ed8d802c]
rdseed[0x42a55b]
...

It sounded like I should not expect to see this with the latest version of
sac.

Thanks,
Carl Tape

---------- Forwarded message ----------
From: <sac-help-request<at>iris.washington.edu>
Date: Wed, Sep 7, 2011 at 10:46 AM
Subject: sac-help Digest, Vol 72, Issue 2
To: sac-help<at>iris.washington.edu

----------------------------------------------------------------------

Message: 1
Date: Fri, 2 Sep 2011 15:24:35 -0400
From: Brian Savage <savage<at>uri.edu>
Subject: Re: [SAC-HELP] compiling sac_v101.3 on linux suse 64bits
To: SAC HELP <sac-help<at>iris.washington.edu>
Cc: Anne Deschamps <deschamps<at>geoazur.unice.fr>
Message-ID: <65AEA0A5-FEAF-407E-B2A3-1CF0C693E2A2<at>uri.edu>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed; delsp=yes

Anne,

I would suggest getting version 101.4. The getline issue was fixed in
this version.

The message you reported comes from the glibc and is indicating a
minor error in the program. These kinds of messages have shown up
before and should be fixed.

See
http://www.iris.washington.edu/pipermail/sac-help/2009-August/000593.html
on how to make the message go away.

If you still see this message when using 101.4, I would like to know
the set of commands you issue before exiting the program so this
problem can be fixed.

Brian Savage
savage<at>uri.edu

On Sep 1, 2011, at 1:56 PM, Anne Deschamps wrote:

Hi

when we use the compile linux version (64bits) all is OK except that
at the end, when we leave the programm we have this error message

*** glibc detected *** sac: free(): invalid next size (fast):
0x00000000009fc570 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x75018)[0x7fb05e59c018]
/lib64/libc.so.6(cfree+0x6c)[0x7fb05e5a0fec]
sac[0x5b27dd]
sac[0x5b2cd9]
sac[0x5a33c0]
sac[0x40dacf]
sac[0x43cf72]
sac[0x4128c3]
sac[0x40b1b0]
sac[0x40555c]
/lib64/libc.so.6(__libc_start_main+0xe6)[0x7fb05e545bc6]
sac[0x404efa]
======= Memory map: ========
00400000-00604000 r-xp 00000000 00:14 1084254 /usr/local/soft_sismo/
sac/sac_v101.3/bin/sac
00703000-0072a000 rw-p 00203000 00:14 1084254 /usr/local/soft_sismo/
sac/sac_v101.3/bin/sac
0072a000-00a2b000 rw-p 00000000 00:00 0 [heap]
7fb058000000-7fb058021000 rw-p 00000000 00:00 0
7fb058021000-7fb05c000000 ---p 00000000 00:00 0
7fb05d2c1000-7fb05d2d7000 r-xp 00000000 08:03 3244152 /lib64/
libgcc_s.so.1
7fb05d2d7000-7fb05d4d6000 ---p 00016000 08:03 3244152 /lib64/
libgcc_s.so.1
7fb05d4d6000-7fb05d4d7000 r--p 00015000 08:03 3244152 /lib64/
libgcc_s.so.1
7fb05d4d7000-7fb05d4d8000 rw-p 00016000 08:03 3244152 /lib64/
libgcc_s.so.1
7fb05d4d8000-7fb05d4dd000 r-xp 00000000 08:03 2859135 /usr/lib64/
libXfixes.so.3.1.0
7fb05d4dd000-7fb05d6dc000 ---p 00005000 08:03 2859135 /usr/lib64/
libXfixes.so.3.1.0
7fb05d6dc000-7fb05d6dd000 r--p 00004000 08:03 2859135 /usr/lib64/
libXfixes.so.3.1.0
7fb05d6dd000-7fb05d6de000 rw-p 00005000 08:03 2859135 /usr/lib64/
libXfixes.so.3.1.0
7fb05d6de000-7fb05d6e7000 r-xp 00000000 08:03 2859133 /usr/lib64/
libXrender.so.1.3.0
7fb05d6e7000-7fb05d8e6000 ---p 00009000 08:03 2859133 /usr/lib64/
libXrender.so.1.3.0
7fb05d8e6000-7fb05d8e7000 r--p 00008000 08:03 2859133 /usr/lib64/
libXrender.so.1.3.0
7fb05d8e7000-7fb05d8e8000 rw-p 00009000 08:03 2859133 /usr/lib64/
libXrender.so.1.3.0
7fb05d8e8000-7fb05d8f2000 r-xp 00000000 08:03 2859279 /usr/lib64/
libXcursor.so.1.0.2
7fb05d8f2000-7fb05daf1000 ---p 0000a000 08:03 2859279 /usr/lib64/
libXcursor.so.1.0.2
7fb05daf1000-7fb05daf2000 r--p 00009000 08:03 2859279 /usr/lib64/
libXcursor.so.1.0.2
7fb05daf2000-7fb05daf3000 rw-p 0000a000 08:03 2859279 /usr/lib64/
libXcursor.so.1.0.2
7fb05daf3000-7fb05dafe000 r-xp 00000000 08:03 3244057 /lib64/
libnss_files-2.11.1.so
7fb05dafe000-7fb05dcfe000 ---p 0000b000 08:03 3244057 /lib64/
libnss_files-2.11.1.so
7fb05dcfe000-7fb05dcff000 r--p 0000b000 08:03 3244057 /lib64/
libnss_files-2.11.1.so
7fb05dcff000-7fb05dd00000 rw-p 0000c000 08:03 3244057 /lib64/
libnss_files-2.11.1.so
7fb05dd00000-7fb05dd02000 r-xp 00000000 08:03 3575339 /usr/lib64/
libXau.so.6.0.0
7fb05dd02000-7fb05df02000 ---p 00002000 08:03 3575339 /usr/lib64/
libXau.so.6.0.0
7fb05df02000-7fb05df03000 r--p 00002000 08:03 3575339 /usr/lib64/
libXau.so.6.0.0
7fb05df03000-7fb05df04000 rw-p 00003000 08:03 3575339 /usr/lib64/
libXau.so.6.0.0
7fb05df04000-7fb05df1f000 r-xp 00000000 08:03 3575639 /usr/lib64/
libxcb.so.1.0.0
7fb05df1f000-7fb05e11e000 ---p 0001b000 08:03 3575639 /usr/lib64/
libxcb.so.1.0.0
7fb05e11e000-7fb05e11f000 r--p 0001a000 08:03 3575639 /usr/lib64/
libxcb.so.1.0.0
7fb05e11f000-7fb05e120000 rw-p 0001b000 08:03 3575639 /usr/lib64/
libxcb.so.1.0.0
7fb05e120000-7fb05e121000 r-xp 00000000 08:03 3575629 /usr/lib64/
libxcb-xlib.so.0.0.0
7fb05e121000-7fb05e320000 ---p 00001000 08:03 3575629 /usr/lib64/
libxcb-xlib.so.0.0.0
7fb05e320000-7fb05e321000 r--p 00000000 08:03 3575629 /usr/lib64/
libxcb-xlib.so.0.0.0
7fb05e321000-7fb05e322000 rw-p 00001000 08:03 3575629 /usr/lib64/
libxcb-xlib.so.0.0.0
7fb05e322000-7fb05e326000 r-xp 00000000 08:03 3244146 /lib64/
libuuid.so.1.3.0
7fb05e326000-7fb05e525000 ---p 00004000 08:03 3244146 /lib64/
libuuid.so.1.3.0
7fb05e525000-7fb05e526000 r--p 00003000 08:03 3244146 /lib64/
libuuid.so.1.3.0
7fb05e526000-7fb05e527000 rw-p 00004000 08:03 3244146 /lib64/
libuuid.so.1.3.0
7fb05e527000-7fb05e67c000 r-xp 00000000 08:03 3244040 /lib64/
libc-2.11.1.so
7fb05e67c000-7fb05e87b000 ---p 00155000 08:03 3244040 /lib64/
libc-2.11.1.so
7fb05e87b000-7fb05e87f000 r--p 00154000 08:03 3244040 /lib64/
libc-2.11.1.so
7fb05e87f000-7fb05e880000 rw-p 00158000 08:03 3244040 /lib64/
libc-2.11.1.so
7fb05e880000-7fb05e885000 rw-p 00000000 00:00 0
7fb05e885000-7fb05e8c3000 r-xp 00000000 08:03 3244109 /lib64/
libncurses.so.5.6
7fb05e8c3000-7fb05eac3000 ---p 0003e000 08:03 3244109 /lib64/
libncurses.so.5.6
7fb05eac3000-7fb05eac7000 r--p 0003e000 08:03 3244109 /lib64/
libncurses.so.5.6
7fb05eac7000-7fb05eacd000 rw-p 00042000 08:03 3244109 /lib64/
libncurses.so.5.6
7fb05eacd000-7fb05eb22000 r-xp 00000000 08:03 3244048 /lib64/
libm-2.11.1.so
7fb05eb22000-7fb05ed21000 ---p 00055000 08:03 3244048 /lib64/
libm-2.11.1.so
7fb05ed21000-7fb05ed22000 r--p 00054000 08:03 3244048 /lib64/
libm-2.11.1.so
7fb05ed22000-7fb05ed23000 rw-p 00055000 08:03 3244048 /lib64/
libm-2.11.1.so
7fb05ed23000-7fb05ed25000 r-xp 00000000 08:03 3244046 /lib64/
libdl-2.11.1.so
7fb05ed25000-7fb05ef25000 ---p 00002000 08:03 3244046 /lib64/
libdl-2.11.1.so
7fb05ef25000-7fb05ef26000 r--p 00002000 08:03 3244046 /lib64/
libdl-2.11.1.so
7fb05ef26000-7fb05ef27000 rw-p 00003000 08:03 3244046 /lib64/
libdl-2.11.1.so
7fb05ef27000-7fb05f05e000 r-xp 00000000 08:03 2859042 /usr/lib64/
libX11.so.6.2.0
7fb05f05e000-7fb05f25e000 ---p 00137000 08:03 2859042 /usr/lib64/
libX11.so.6.2.0
7fb05f25e000-7fb05f25f000 r--p 00137000 08:03 2859042 /usr/lib64/
libX11.so.6.2.0
7fb05f25f000-7fb05f264000 rw-p 00138000 08:03 2859042 /usr/lib64/
libX11.so.6.2.0Abort

So I would like to compile the source to see if it can be better

When I do so, I have the error message
In file included from ../../sac-101.3b/src/bbs/setbbv.c:12:
../../sac-101.3b/inc/co.h:40: error: conflicting types for 'getline'
/usr/include/stdio.h:653: error: previous declaration of 'getline'
was here
make[1]: *** [bbs/setbbv.o] Error 1
make: *** [all-recursive] Error 1

Is that any solution to go head....

Thanks

Anne
--
Anne Deschamps
G?oazur/CNRS
B?t 3, 250 rue A. Einstein
06560 Sophia Antipolis
tel: +33 4 92 94 26 16
secr?tariat : +33 4 92 94 26 02
_______________________________________________
sac-help mailing list
sac-help<at>iris.washington.edu
http://www.iris.washington.edu/mailman/listinfo/sac-help


  • I have trouble following your discussion, but there are problems both with
    RDSEED v5.1 and with running the compiled SAC v 101.5 on Linux (64 and
    maybe 32 bit).

    You say you are using the pre-release version of SAC 101.5. Bugs were
    fixed between then and the "real" release.

    I do not work with Linux, but my impression is that Linux, unlike Sun and
    Mac, keep only the libraries for the current release. Hence, on Mac, a
    binary built on 10.6 will run on 10.7 (or a 10.4 build will run on 10.5)
    and on Sun a build on 2.8 will (probably) run on 2.9 or 2.10 because Mac
    and Sun keep the old libraries. If a Linux binary does not work on your
    machine, try building it from sources.

    There are problems with RDSEED v5.1 with polezero files (see the TRANSFER
    help file for the final SAC v101.5 release). On some systems the END time
    is something like 1991, so it will not find your files. I got around that
    by manually changing the END times. (One can concatinate all the pz files
    and do a global change or you can use sed.) There are also occasionally
    exceptions that bomb RDSEED in v5.1. v5.2 is about to come out or you can
    use v5.0 if these fixes do not help.



  • Hi Carl-

    If the issue is with rdseed 5.1, then that is a problem that IRIS DMC
    has to address. Can you send us a copy/paste of the input text to
    rdseed that you used, so that we can reproduce the error? This will
    probably not get resolved until the first couple of weeks of January,
    since most of the DMC staff is out on holiday. If I get any ideas
    about what's wrong, though, I'll contact you.

    Thanks for letting us know about this issue. As Arthur indicated, we
    have a v5.2 coming out that has some bug fixes, but I am not certain
    that this issue has been examined or resolved, so it will be good for
    us to address this while we still have the release candidate on the
    workbench.

    Happy Holidays,

    -Rob


    On Dec 21, 2011, at 6:37 PM, Carl Tape wrote:

    Dear SAC-help:

    I just downloaded rdseedv5.1 and tried to extract waveforms,
    response, and PZ files for a file from IRIS. I got the error and
    behavior mentioned below by Anne Deschamps. I have sac 101.5
    installed (though the pre-release version), with linux opensuse
    11.3, 64-bit. I do know that it only happens if you ask to produce
    polezero files -- for waveforms or response files, no error.

    The exit looks like this:

    ...
    Writing IU.YSS.00.LHZ, 3600 samples (binary), starting 2004,361
    00:55:50.7856 UT
    *** glibc detected *** rdseed: free(): invalid pointer:
    0x000000000043b845 ***
    ======= Backtrace: =========
    /lib64/libc.so.6(+0x73286)[0x7f10ed8d3286]
    /lib64/libc.so.6(cfree+0x6c)[0x7f10ed8d802c]
    rdseed[0x42a55b]
    ...

    It sounded like I should not expect to see this with the latest
    version of sac.

    Thanks,
    Carl Tape

    ---------- Forwarded message ----------
    From: <sac-help-request<at>iris.washington.edu>
    Date: Wed, Sep 7, 2011 at 10:46 AM
    Subject: sac-help Digest, Vol 72, Issue 2
    To: sac-help<at>iris.washington.edu

    ----------------------------------------------------------------------

    Message: 1
    Date: Fri, 2 Sep 2011 15:24:35 -0400
    From: Brian Savage <savage<at>uri.edu>
    Subject: Re: [SAC-HELP] compiling sac_v101.3 on linux suse 64bits
    To: SAC HELP <sac-help<at>iris.washington.edu>
    Cc: Anne Deschamps <deschamps<at>geoazur.unice.fr>
    Message-ID: <65AEA0A5-FEAF-407E-B2A3-1CF0C693E2A2<at>uri.edu>
    Content-Type: text/plain; charset=ISO-8859-1; format=flowed; delsp=yes

    Anne,

    I would suggest getting version 101.4. The getline issue was fixed in
    this version.

    The message you reported comes from the glibc and is indicating a
    minor error in the program. These kinds of messages have shown up
    before and should be fixed.

    See
    http://www.iris.washington.edu/pipermail/sac-help/2009-August/000593.html
    on how to make the message go away.

    If you still see this message when using 101.4, I would like to know
    the set of commands you issue before exiting the program so this
    problem can be fixed.

    Brian Savage
    savage<at>uri.edu

    On Sep 1, 2011, at 1:56 PM, Anne Deschamps wrote:

    Hi

    when we use the compile linux version (64bits) all is OK except that
    at the end, when we leave the programm we have this error message

    *** glibc detected *** sac: free(): invalid next size (fast):
    0x00000000009fc570 ***
    ======= Backtrace: =========
    /lib64/libc.so.6(+0x75018)[0x7fb05e59c018]
    /lib64/libc.so.6(cfree+0x6c)[0x7fb05e5a0fec]
    sac[0x5b27dd]
    sac[0x5b2cd9]
    sac[0x5a33c0]
    sac[0x40dacf]
    sac[0x43cf72]
    sac[0x4128c3]
    sac[0x40b1b0]
    sac[0x40555c]
    /lib64/libc.so.6(__libc_start_main+0xe6)[0x7fb05e545bc6]
    sac[0x404efa]
    ======= Memory map: ========
    00400000-00604000 r-xp 00000000 00:14 1084254 /usr/local/
    soft_sismo/
    sac/sac_v101.3/bin/sac
    00703000-0072a000 rw-p 00203000 00:14 1084254 /usr/local/
    soft_sismo/
    sac/sac_v101.3/bin/sac
    0072a000-00a2b000 rw-p 00000000 00:00 0 [heap]
    7fb058000000-7fb058021000 rw-p 00000000 00:00 0
    7fb058021000-7fb05c000000 ---p 00000000 00:00 0
    7fb05d2c1000-7fb05d2d7000 r-xp 00000000 08:03 3244152 /lib64/
    libgcc_s.so.1
    7fb05d2d7000-7fb05d4d6000 ---p 00016000 08:03 3244152 /lib64/
    libgcc_s.so.1
    7fb05d4d6000-7fb05d4d7000 r--p 00015000 08:03 3244152 /lib64/
    libgcc_s.so.1
    7fb05d4d7000-7fb05d4d8000 rw-p 00016000 08:03 3244152 /lib64/
    libgcc_s.so.1
    7fb05d4d8000-7fb05d4dd000 r-xp 00000000 08:03 2859135 /usr/lib64/
    libXfixes.so.3.1.0
    7fb05d4dd000-7fb05d6dc000 ---p 00005000 08:03 2859135 /usr/lib64/
    libXfixes.so.3.1.0
    7fb05d6dc000-7fb05d6dd000 r--p 00004000 08:03 2859135 /usr/lib64/
    libXfixes.so.3.1.0
    7fb05d6dd000-7fb05d6de000 rw-p 00005000 08:03 2859135 /usr/lib64/
    libXfixes.so.3.1.0
    7fb05d6de000-7fb05d6e7000 r-xp 00000000 08:03 2859133 /usr/lib64/
    libXrender.so.1.3.0
    7fb05d6e7000-7fb05d8e6000 ---p 00009000 08:03 2859133 /usr/lib64/
    libXrender.so.1.3.0
    7fb05d8e6000-7fb05d8e7000 r--p 00008000 08:03 2859133 /usr/lib64/
    libXrender.so.1.3.0
    7fb05d8e7000-7fb05d8e8000 rw-p 00009000 08:03 2859133 /usr/lib64/
    libXrender.so.1.3.0
    7fb05d8e8000-7fb05d8f2000 r-xp 00000000 08:03 2859279 /usr/lib64/
    libXcursor.so.1.0.2
    7fb05d8f2000-7fb05daf1000 ---p 0000a000 08:03 2859279 /usr/lib64/
    libXcursor.so.1.0.2
    7fb05daf1000-7fb05daf2000 r--p 00009000 08:03 2859279 /usr/lib64/
    libXcursor.so.1.0.2
    7fb05daf2000-7fb05daf3000 rw-p 0000a000 08:03 2859279 /usr/lib64/
    libXcursor.so.1.0.2
    7fb05daf3000-7fb05dafe000 r-xp 00000000 08:03 3244057 /lib64/
    libnss_files-2.11.1.so
    7fb05dafe000-7fb05dcfe000 ---p 0000b000 08:03 3244057 /lib64/
    libnss_files-2.11.1.so
    7fb05dcfe000-7fb05dcff000 r--p 0000b000 08:03 3244057 /lib64/
    libnss_files-2.11.1.so
    7fb05dcff000-7fb05dd00000 rw-p 0000c000 08:03 3244057 /lib64/
    libnss_files-2.11.1.so
    7fb05dd00000-7fb05dd02000 r-xp 00000000 08:03 3575339 /usr/lib64/
    libXau.so.6.0.0
    7fb05dd02000-7fb05df02000 ---p 00002000 08:03 3575339 /usr/lib64/
    libXau.so.6.0.0
    7fb05df02000-7fb05df03000 r--p 00002000 08:03 3575339 /usr/lib64/
    libXau.so.6.0.0
    7fb05df03000-7fb05df04000 rw-p 00003000 08:03 3575339 /usr/lib64/
    libXau.so.6.0.0
    7fb05df04000-7fb05df1f000 r-xp 00000000 08:03 3575639 /usr/lib64/
    libxcb.so.1.0.0
    7fb05df1f000-7fb05e11e000 ---p 0001b000 08:03 3575639 /usr/lib64/
    libxcb.so.1.0.0
    7fb05e11e000-7fb05e11f000 r--p 0001a000 08:03 3575639 /usr/lib64/
    libxcb.so.1.0.0
    7fb05e11f000-7fb05e120000 rw-p 0001b000 08:03 3575639 /usr/lib64/
    libxcb.so.1.0.0
    7fb05e120000-7fb05e121000 r-xp 00000000 08:03 3575629 /usr/lib64/
    libxcb-xlib.so.0.0.0
    7fb05e121000-7fb05e320000 ---p 00001000 08:03 3575629 /usr/lib64/
    libxcb-xlib.so.0.0.0
    7fb05e320000-7fb05e321000 r--p 00000000 08:03 3575629 /usr/lib64/
    libxcb-xlib.so.0.0.0
    7fb05e321000-7fb05e322000 rw-p 00001000 08:03 3575629 /usr/lib64/
    libxcb-xlib.so.0.0.0
    7fb05e322000-7fb05e326000 r-xp 00000000 08:03 3244146 /lib64/
    libuuid.so.1.3.0
    7fb05e326000-7fb05e525000 ---p 00004000 08:03 3244146 /lib64/
    libuuid.so.1.3.0
    7fb05e525000-7fb05e526000 r--p 00003000 08:03 3244146 /lib64/
    libuuid.so.1.3.0
    7fb05e526000-7fb05e527000 rw-p 00004000 08:03 3244146 /lib64/
    libuuid.so.1.3.0
    7fb05e527000-7fb05e67c000 r-xp 00000000 08:03 3244040 /lib64/
    libc-2.11.1.so
    7fb05e67c000-7fb05e87b000 ---p 00155000 08:03 3244040 /lib64/
    libc-2.11.1.so
    7fb05e87b000-7fb05e87f000 r--p 00154000 08:03 3244040 /lib64/
    libc-2.11.1.so
    7fb05e87f000-7fb05e880000 rw-p 00158000 08:03 3244040 /lib64/
    libc-2.11.1.so
    7fb05e880000-7fb05e885000 rw-p 00000000 00:00 0
    7fb05e885000-7fb05e8c3000 r-xp 00000000 08:03 3244109 /lib64/
    libncurses.so.5.6
    7fb05e8c3000-7fb05eac3000 ---p 0003e000 08:03 3244109 /lib64/
    libncurses.so.5.6
    7fb05eac3000-7fb05eac7000 r--p 0003e000 08:03 3244109 /lib64/
    libncurses.so.5.6
    7fb05eac7000-7fb05eacd000 rw-p 00042000 08:03 3244109 /lib64/
    libncurses.so.5.6
    7fb05eacd000-7fb05eb22000 r-xp 00000000 08:03 3244048 /lib64/
    libm-2.11.1.so
    7fb05eb22000-7fb05ed21000 ---p 00055000 08:03 3244048 /lib64/
    libm-2.11.1.so
    7fb05ed21000-7fb05ed22000 r--p 00054000 08:03 3244048 /lib64/
    libm-2.11.1.so
    7fb05ed22000-7fb05ed23000 rw-p 00055000 08:03 3244048 /lib64/
    libm-2.11.1.so
    7fb05ed23000-7fb05ed25000 r-xp 00000000 08:03 3244046 /lib64/
    libdl-2.11.1.so
    7fb05ed25000-7fb05ef25000 ---p 00002000 08:03 3244046 /lib64/
    libdl-2.11.1.so
    7fb05ef25000-7fb05ef26000 r--p 00002000 08:03 3244046 /lib64/
    libdl-2.11.1.so
    7fb05ef26000-7fb05ef27000 rw-p 00003000 08:03 3244046 /lib64/
    libdl-2.11.1.so
    7fb05ef27000-7fb05f05e000 r-xp 00000000 08:03 2859042 /usr/lib64/
    libX11.so.6.2.0
    7fb05f05e000-7fb05f25e000 ---p 00137000 08:03 2859042 /usr/lib64/
    libX11.so.6.2.0
    7fb05f25e000-7fb05f25f000 r--p 00137000 08:03 2859042 /usr/lib64/
    libX11.so.6.2.0
    7fb05f25f000-7fb05f264000 rw-p 00138000 08:03 2859042 /usr/lib64/
    libX11.so.6.2.0Abort

    So I would like to compile the source to see if it can be better

    When I do so, I have the error message
    In file included from ../../sac-101.3b/src/bbs/setbbv.c:12:
    ../../sac-101.3b/inc/co.h:40: error: conflicting types for 'getline'
    /usr/include/stdio.h:653: error: previous declaration of 'getline'
    was here
    make[1]: *** [bbs/setbbv.o] Error 1
    make: *** [all-recursive] Error 1

    Is that any solution to go head....

    Thanks

    Anne
    --
    Anne Deschamps
    G?oazur/CNRS
    B?t 3, 250 rue A. Einstein
    06560 Sophia Antipolis
    tel: +33 4 92 94 26 16
    secr?tariat : +33 4 92 94 26 02
    _______________________________________________
    sac-help mailing list
    sac-help<at>iris.washington.edu
    http://www.iris.washington.edu/mailman/listinfo/sac-help


    _______________________________________________
    sac-help mailing list
    sac-help<at>iris.washington.edu
    http://www.iris.washington.edu/mailman/listinfo/sac-help


    • Hi Arthur and Rob,

      Thanks for the replies. No need to address this now.

      First, I downloaded sac-101.5 and reproduced the problem I mentioned: the
      gclib exit error and message. My inputs into rdseedv5.1 are "d", "y" for
      polezeros, "3" to check all, "y" to extract response," and the rest
      defaults. If you do not request polezeros, there is no error message or
      exit. If you do request polezeros, there is an error message, but it
      appears that the files are generated (which is good!). (The exit might be
      an issue if you are running a script with multiple files.)

      I tried recompiling rdseed and did notice this warning (among others):

      cc -I../Include -O -m64 -c -o output_sac.o output_sac.c
      output_sac.c: In function ‘output_sac’:
      output_sac.c:274: warning: assignment makes pointer from integer without a
      cast
      output_sac.c: In function ‘write_out_PnZs’:
      output_sac.c:1521: warning: assignment makes pointer from integer without a
      cast

      Anyway, there is no urgency to this. I will try things out with rdseedv5.2
      and can try out beta versions in the mean time, if you want.

      Enjoy the holidays. Today is 3 seconds longer than yesterday up here in
      Fairbanks, so the days are getting longer!

      Carl

      On Thu, Dec 22, 2011 at 7:44 AM, Robert Casey <rob<at>iris.washington.edu>wrote:


      Hi Carl-

      If the issue is with rdseed 5.1, then that is a problem that IRIS DMC has
      to address. Can you send us a copy/paste of the input text to rdseed that
      you used, so that we can reproduce the error? This will probably not get
      resolved until the first couple of weeks of January, since most of the DMC
      staff is out on holiday. If I get any ideas about what's wrong, though,
      I'll contact you.

      Thanks for letting us know about this issue. As Arthur indicated, we have
      a v5.2 coming out that has some bug fixes, but I am not certain that this
      issue has been examined or resolved, so it will be good for us to address
      this while we still have the release candidate on the workbench.

      Happy Holidays,

      -Rob


      On Dec 21, 2011, at 6:37 PM, Carl Tape wrote:

      Dear SAC-help:

      I just downloaded rdseedv5.1 and tried to extract waveforms, response, and
      PZ files for a file from IRIS. I got the error and behavior mentioned below
      by Anne Deschamps. I have sac 101.5 installed (though the pre-release
      version), with linux opensuse 11.3, 64-bit. I do know that it only happens
      if you ask to produce polezero files -- for waveforms or response files, no
      error.

      The exit looks like this:

      ...
      Writing IU.YSS.00.LHZ, 3600 samples (binary), starting 2004,361
      00:55:50.7856 UT
      *** glibc detected *** rdseed: free(): invalid pointer: 0x000000000043b845
      ***
      ======= Backtrace: =========
      /lib64/libc.so.6(+0x73286)[0x7f10ed8d3286]
      /lib64/libc.so.6(cfree+0x6c)[0x7f10ed8d802c]
      rdseed[0x42a55b]
      ...

      It sounded like I should not expect to see this with the latest version of
      sac.

      Thanks,
      Carl Tape

      ---------- Forwarded message ----------
      From: <sac-help-request<at>iris.washington.edu>
      Date: Wed, Sep 7, 2011 at 10:46 AM
      Subject: sac-help Digest, Vol 72, Issue 2
      To: sac-help<at>iris.washington.edu

      ----------------------------------------------------------------------

      Message: 1
      Date: Fri, 2 Sep 2011 15:24:35 -0400
      From: Brian Savage <savage<at>uri.edu>
      Subject: Re: [SAC-HELP] compiling sac_v101.3 on linux suse 64bits
      To: SAC HELP <sac-help<at>iris.washington.edu>
      Cc: Anne Deschamps <deschamps<at>geoazur.unice.fr>
      Message-ID: <65AEA0A5-FEAF-407E-B2A3-1CF0C693E2A2<at>uri.edu>
      Content-Type: text/plain; charset=ISO-8859-1; format=flowed; delsp=yes

      Anne,

      I would suggest getting version 101.4. The getline issue was fixed in
      this version.

      The message you reported comes from the glibc and is indicating a
      minor error in the program. These kinds of messages have shown up
      before and should be fixed.

      See
      http://www.iris.washington.edu/pipermail/sac-help/2009-August/000593.html
      on how to make the message go away.

      If you still see this message when using 101.4, I would like to know
      the set of commands you issue before exiting the program so this
      problem can be fixed.

      Brian Savage
      savage<at>uri.edu

      On Sep 1, 2011, at 1:56 PM, Anne Deschamps wrote:

      Hi

      when we use the compile linux version (64bits) all is OK except that
      at the end, when we leave the programm we have this error message

      *** glibc detected *** sac: free(): invalid next size (fast):
      0x00000000009fc570 ***
      ======= Backtrace: =========
      /lib64/libc.so.6(+0x75018)[0x7fb05e59c018]
      /lib64/libc.so.6(cfree+0x6c)[0x7fb05e5a0fec]
      sac[0x5b27dd]
      sac[0x5b2cd9]
      sac[0x5a33c0]
      sac[0x40dacf]
      sac[0x43cf72]
      sac[0x4128c3]
      sac[0x40b1b0]
      sac[0x40555c]
      /lib64/libc.so.6(__libc_start_main+0xe6)[0x7fb05e545bc6]
      sac[0x404efa]
      ======= Memory map: ========
      00400000-00604000 r-xp 00000000 00:14 1084254 /usr/local/soft_sismo/
      sac/sac_v101.3/bin/sac
      00703000-0072a000 rw-p 00203000 00:14 1084254 /usr/local/soft_sismo/
      sac/sac_v101.3/bin/sac
      0072a000-00a2b000 rw-p 00000000 00:00 0 [heap]
      7fb058000000-7fb058021000 rw-p 00000000 00:00 0
      7fb058021000-7fb05c000000 ---p 00000000 00:00 0
      7fb05d2c1000-7fb05d2d7000 r-xp 00000000 08:03 3244152 /lib64/
      libgcc_s.so.1
      7fb05d2d7000-7fb05d4d6000 ---p 00016000 08:03 3244152 /lib64/
      libgcc_s.so.1
      7fb05d4d6000-7fb05d4d7000 r--p 00015000 08:03 3244152 /lib64/
      libgcc_s.so.1
      7fb05d4d7000-7fb05d4d8000 rw-p 00016000 08:03 3244152 /lib64/
      libgcc_s.so.1
      7fb05d4d8000-7fb05d4dd000 r-xp 00000000 08:03 2859135 /usr/lib64/
      libXfixes.so.3.1.0
      7fb05d4dd000-7fb05d6dc000 ---p 00005000 08:03 2859135 /usr/lib64/
      libXfixes.so.3.1.0
      7fb05d6dc000-7fb05d6dd000 r--p 00004000 08:03 2859135 /usr/lib64/
      libXfixes.so.3.1.0
      7fb05d6dd000-7fb05d6de000 rw-p 00005000 08:03 2859135 /usr/lib64/
      libXfixes.so.3.1.0
      7fb05d6de000-7fb05d6e7000 r-xp 00000000 08:03 2859133 /usr/lib64/
      libXrender.so.1.3.0
      7fb05d6e7000-7fb05d8e6000 ---p 00009000 08:03 2859133 /usr/lib64/
      libXrender.so.1.3.0
      7fb05d8e6000-7fb05d8e7000 r--p 00008000 08:03 2859133 /usr/lib64/
      libXrender.so.1.3.0
      7fb05d8e7000-7fb05d8e8000 rw-p 00009000 08:03 2859133 /usr/lib64/
      libXrender.so.1.3.0
      7fb05d8e8000-7fb05d8f2000 r-xp 00000000 08:03 2859279 /usr/lib64/
      libXcursor.so.1.0.2
      7fb05d8f2000-7fb05daf1000 ---p 0000a000 08:03 2859279 /usr/lib64/
      libXcursor.so.1.0.2
      7fb05daf1000-7fb05daf2000 r--p 00009000 08:03 2859279 /usr/lib64/
      libXcursor.so.1.0.2
      7fb05daf2000-7fb05daf3000 rw-p 0000a000 08:03 2859279 /usr/lib64/
      libXcursor.so.1.0.2
      7fb05daf3000-7fb05dafe000 r-xp 00000000 08:03 3244057 /lib64/
      libnss_files-2.11.1.so
      7fb05dafe000-7fb05dcfe000 ---p 0000b000 08:03 3244057 /lib64/
      libnss_files-2.11.1.so
      7fb05dcfe000-7fb05dcff000 r--p 0000b000 08:03 3244057 /lib64/
      libnss_files-2.11.1.so
      7fb05dcff000-7fb05dd00000 rw-p 0000c000 08:03 3244057 /lib64/
      libnss_files-2.11.1.so
      7fb05dd00000-7fb05dd02000 r-xp 00000000 08:03 3575339 /usr/lib64/
      libXau.so.6.0.0
      7fb05dd02000-7fb05df02000 ---p 00002000 08:03 3575339 /usr/lib64/
      libXau.so.6.0.0
      7fb05df02000-7fb05df03000 r--p 00002000 08:03 3575339 /usr/lib64/
      libXau.so.6.0.0
      7fb05df03000-7fb05df04000 rw-p 00003000 08:03 3575339 /usr/lib64/
      libXau.so.6.0.0
      7fb05df04000-7fb05df1f000 r-xp 00000000 08:03 3575639 /usr/lib64/
      libxcb.so.1.0.0
      7fb05df1f000-7fb05e11e000 ---p 0001b000 08:03 3575639 /usr/lib64/
      libxcb.so.1.0.0
      7fb05e11e000-7fb05e11f000 r--p 0001a000 08:03 3575639 /usr/lib64/
      libxcb.so.1.0.0
      7fb05e11f000-7fb05e120000 rw-p 0001b000 08:03 3575639 /usr/lib64/
      libxcb.so.1.0.0
      7fb05e120000-7fb05e121000 r-xp 00000000 08:03 3575629 /usr/lib64/
      libxcb-xlib.so.0.0.0
      7fb05e121000-7fb05e320000 ---p 00001000 08:03 3575629 /usr/lib64/
      libxcb-xlib.so.0.0.0
      7fb05e320000-7fb05e321000 r--p 00000000 08:03 3575629 /usr/lib64/
      libxcb-xlib.so.0.0.0
      7fb05e321000-7fb05e322000 rw-p 00001000 08:03 3575629 /usr/lib64/
      libxcb-xlib.so.0.0.0
      7fb05e322000-7fb05e326000 r-xp 00000000 08:03 3244146 /lib64/
      libuuid.so.1.3.0
      7fb05e326000-7fb05e525000 ---p 00004000 08:03 3244146 /lib64/
      libuuid.so.1.3.0
      7fb05e525000-7fb05e526000 r--p 00003000 08:03 3244146 /lib64/
      libuuid.so.1.3.0
      7fb05e526000-7fb05e527000 rw-p 00004000 08:03 3244146 /lib64/
      libuuid.so.1.3.0
      7fb05e527000-7fb05e67c000 r-xp 00000000 08:03 3244040 /lib64/
      libc-2.11.1.so
      7fb05e67c000-7fb05e87b000 ---p 00155000 08:03 3244040 /lib64/
      libc-2.11.1.so
      7fb05e87b000-7fb05e87f000 r--p 00154000 08:03 3244040 /lib64/
      libc-2.11.1.so
      7fb05e87f000-7fb05e880000 rw-p 00158000 08:03 3244040 /lib64/
      libc-2.11.1.so
      7fb05e880000-7fb05e885000 rw-p 00000000 00:00 0
      7fb05e885000-7fb05e8c3000 r-xp 00000000 08:03 3244109 /lib64/
      libncurses.so.5.6
      7fb05e8c3000-7fb05eac3000 ---p 0003e000 08:03 3244109 /lib64/
      libncurses.so.5.6
      7fb05eac3000-7fb05eac7000 r--p 0003e000 08:03 3244109 /lib64/
      libncurses.so.5.6
      7fb05eac7000-7fb05eacd000 rw-p 00042000 08:03 3244109 /lib64/
      libncurses.so.5.6
      7fb05eacd000-7fb05eb22000 r-xp 00000000 08:03 3244048 /lib64/
      libm-2.11.1.so
      7fb05eb22000-7fb05ed21000 ---p 00055000 08:03 3244048 /lib64/
      libm-2.11.1.so
      7fb05ed21000-7fb05ed22000 r--p 00054000 08:03 3244048 /lib64/
      libm-2.11.1.so
      7fb05ed22000-7fb05ed23000 rw-p 00055000 08:03 3244048 /lib64/
      libm-2.11.1.so
      7fb05ed23000-7fb05ed25000 r-xp 00000000 08:03 3244046 /lib64/
      libdl-2.11.1.so
      7fb05ed25000-7fb05ef25000 ---p 00002000 08:03 3244046 /lib64/
      libdl-2.11.1.so
      7fb05ef25000-7fb05ef26000 r--p 00002000 08:03 3244046 /lib64/
      libdl-2.11.1.so
      7fb05ef26000-7fb05ef27000 rw-p 00003000 08:03 3244046 /lib64/
      libdl-2.11.1.so
      7fb05ef27000-7fb05f05e000 r-xp 00000000 08:03 2859042 /usr/lib64/
      libX11.so.6.2.0
      7fb05f05e000-7fb05f25e000 ---p 00137000 08:03 2859042 /usr/lib64/
      libX11.so.6.2.0
      7fb05f25e000-7fb05f25f000 r--p 00137000 08:03 2859042 /usr/lib64/
      libX11.so.6.2.0
      7fb05f25f000-7fb05f264000 rw-p 00138000 08:03 2859042 /usr/lib64/
      libX11.so.6.2.0Abort

      So I would like to compile the source to see if it can be better

      When I do so, I have the error message
      In file included from ../../sac-101.3b/src/bbs/setbbv.c:12:
      ../../sac-101.3b/inc/co.h:40: error: conflicting types for 'getline'
      /usr/include/stdio.h:653: error: previous declaration of 'getline'
      was here
      make[1]: *** [bbs/setbbv.o] Error 1
      make: *** [all-recursive] Error 1

      Is that any solution to go head....

      Thanks

      Anne
      --
      Anne Deschamps
      G?oazur/CNRS
      B?t 3, 250 rue A. Einstein
      06560 Sophia Antipolis
      tel: +33 4 92 94 26 16
      secr?tariat : +33 4 92 94 26 02
      _______________________________________________
      sac-help mailing list
      sac-help<at>iris.washington.edu
      http://www.iris.washington.edu/mailman/listinfo/sac-help


      _______________________________________________
      sac-help mailing list
      sac-help<at>iris.washington.edu
      http://www.iris.washington.edu/mailman/listinfo/sac-help




      • Carl, a couple of comments/questions.

        First, after sending my message last night I realized it was incomplete:
        In my experience, on all platforms one often finds that a build on a
        release may not work on earlier releases if dynamical libraries are
        involved. What may be different about Linux is that it may work only on
        the same release it was built on. The earlier reported problem on SAC on
        Linux 64 may have been because the build was on a later version.

        Next, did you do your test with the built-from-sources RDSEED v5.1 build?

        I got similar warnings to the ones you got when I built v5.2 beta on my
        Mac OS 10.6. Interestingly, no warnings when I built it on OS 10.4 Intel.
        Those warnings do not seem to matter.

        RDSEED v5.1 has several new features -- especially dealing with polezero
        files. As is often the case, new features may lead to new bugs. Working
        with them on getting compatibility between RDSEED and SAC led to a few of
        the changes between the pre-release and final versions of SAC v101.5.
        Aside from the polezero stuff, the main changes I can recall off hand fro
        a SAC point of view is that now the default EVDP is kilometers and
        CONSTANT is no longer defined.

        I suggest you make your SEED volume available to Rob/IRIS as Rob wants to
        check to see if this might be a new bug. As they can be large, I suggest
        you put it on a Web site and tell Rob/Chris where it is. Otherwise, Rob
        can probably write you (off list) instructions about how you can
        upload it to an IRIS server. (Chris is the one who had been working on
        RDSEED, but I think he is on vacation right now, so write both.)

        Arthur

        p.s. What is the day for you with the earliest sunset? For us it is
        around December 6. We have already gained four minutes. The latest
        sunrise will be around January 6. However, by local time it was the last
        day of Daylight Savings time.

        On Thu, 22 Dec 2011, Carl Tape wrote:

        First, I downloaded sac-101.5 and reproduced the problem I mentioned:
        the gclib exit error and message. My inputs into rdseedv5.1 are "d", "y"
        for polezeros, "3" to check all, "y" to extract response," and the rest
        defaults. If you do not request polezeros, there is no error message or
        exit. If you do request polezeros, there is an error message, but it
        appears that the files are generated (which is good!). (The exit might
        be an issue if you are running a script with multiple files.)

        I tried recompiling rdseed and did notice this warning (among others):

        cc -I../Include -O -m64    -c -o output_sac.o output_sac.c
        output_sac.c: In function ‘output_sac’:
        output_sac.c:274: warning: assignment makes pointer from integer without a
        cast
        output_sac.c: In function ‘write_out_PnZs’:
        output_sac.c:1521: warning: assignment makes pointer from integer without a
        cast

        Anyway, there is no urgency to this. I will try things out with rdseedv5.2
        and can try out beta versions in the mean time, if you want.
Page built 10:43:54 | v.b'ea7a92