[SAC-HELP] glibc detected (when trying to get polezeros using rdseed)

Wed Dec 21 18:37:25 PST 2011

Dear SAC-help:

I just downloaded rdseedv5.1 and tried to extract waveforms, response, and
PZ files for a file from IRIS. I got the error and behavior mentioned below
by Anne Deschamps. I have sac 101.5 installed (though the pre-release
version), with linux opensuse 11.3, 64-bit. I do know that it only happens
if you ask to produce polezero files -- for waveforms or response files, no
error.

The exit looks like this:

...
Writing IU.YSS.00.LHZ,  3600 samples (binary), starting 2004,361
00:55:50.7856 UT
*** glibc detected *** rdseed: free(): invalid pointer: 0x000000000043b845
***
======= Backtrace: =========
/lib64/libc.so.6(+0x73286)[0x7f10ed8d3286]
/lib64/libc.so.6(cfree+0x6c)[0x7f10ed8d802c]
rdseed[0x42a55b]
...

It sounded like I should not expect to see this with the latest version of
sac.

Thanks,
Carl Tape

---------- Forwarded message ----------
From: <sac-help-request at iris.washington.edu>
Date: Wed, Sep 7, 2011 at 10:46 AM
Subject: sac-help Digest, Vol 72, Issue 2
To: sac-help at iris.washington.edu

----------------------------------------------------------------------

Message: 1
Date: Fri, 2 Sep 2011 15:24:35 -0400
From: Brian Savage <savage at uri.edu>
Subject: Re: [SAC-HELP] compiling sac_v101.3 on linux suse 64bits
To: SAC HELP <sac-help at iris.washington.edu>
Cc: Anne Deschamps <deschamps at geoazur.unice.fr>
Message-ID: <65AEA0A5-FEAF-407E-B2A3-1CF0C693E2A2 at uri.edu>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed; delsp=yes

Anne,

I would suggest getting version 101.4.  The getline issue was fixed in
this version.

The message you reported comes from the glibc and is indicating a
minor error in the program. These kinds of messages have shown up
before and should be fixed.

See
http://www.iris.washington.edu/pipermail/sac-help/2009-August/000593.html
on how to make the message go away.

If you still see this message when using 101.4, I would like to know
the set of commands you issue before exiting the program so this
problem can be fixed.

Brian Savage
savage at uri.edu

On Sep 1, 2011, at 1:56 PM, Anne Deschamps wrote:

> Hi
>
> when we use the compile linux version (64bits) all is OK except that
> at the end, when we leave the programm we have this error message
>
> *** glibc detected *** sac: free(): invalid next size (fast):
> 0x00000000009fc570 ***
> ======= Backtrace: =========
> /lib64/libc.so.6(+0x75018)[0x7fb05e59c018]
> /lib64/libc.so.6(cfree+0x6c)[0x7fb05e5a0fec]
> sac[0x5b27dd]
> sac[0x5b2cd9]
> sac[0x5a33c0]
> sac[0x40dacf]
> sac[0x43cf72]
> sac[0x4128c3]
> sac[0x40b1b0]
> sac[0x40555c]
> /lib64/libc.so.6(__libc_start_main+0xe6)[0x7fb05e545bc6]
> sac[0x404efa]
> ======= Memory map: ========
> 00400000-00604000 r-xp 00000000 00:14 1084254  /usr/local/soft_sismo/
> sac/sac_v101.3/bin/sac
> 00703000-0072a000 rw-p 00203000 00:14 1084254  /usr/local/soft_sismo/
> sac/sac_v101.3/bin/sac
> 0072a000-00a2b000 rw-p 00000000 00:00 0  [heap]
> 7fb058000000-7fb058021000 rw-p 00000000 00:00 0
> 7fb058021000-7fb05c000000 ---p 00000000 00:00 0
> 7fb05d2c1000-7fb05d2d7000 r-xp 00000000 08:03 3244152  /lib64/
> libgcc_s.so.1
> 7fb05d2d7000-7fb05d4d6000 ---p 00016000 08:03 3244152  /lib64/
> libgcc_s.so.1
> 7fb05d4d6000-7fb05d4d7000 r--p 00015000 08:03 3244152  /lib64/
> libgcc_s.so.1
> 7fb05d4d7000-7fb05d4d8000 rw-p 00016000 08:03 3244152  /lib64/
> libgcc_s.so.1
> 7fb05d4d8000-7fb05d4dd000 r-xp 00000000 08:03 2859135  /usr/lib64/
> libXfixes.so.3.1.0
> 7fb05d4dd000-7fb05d6dc000 ---p 00005000 08:03 2859135  /usr/lib64/
> libXfixes.so.3.1.0
> 7fb05d6dc000-7fb05d6dd000 r--p 00004000 08:03 2859135  /usr/lib64/
> libXfixes.so.3.1.0
> 7fb05d6dd000-7fb05d6de000 rw-p 00005000 08:03 2859135  /usr/lib64/
> libXfixes.so.3.1.0
> 7fb05d6de000-7fb05d6e7000 r-xp 00000000 08:03 2859133  /usr/lib64/
> libXrender.so.1.3.0
> 7fb05d6e7000-7fb05d8e6000 ---p 00009000 08:03 2859133  /usr/lib64/
> libXrender.so.1.3.0
> 7fb05d8e6000-7fb05d8e7000 r--p 00008000 08:03 2859133  /usr/lib64/
> libXrender.so.1.3.0
> 7fb05d8e7000-7fb05d8e8000 rw-p 00009000 08:03 2859133  /usr/lib64/
> libXrender.so.1.3.0
> 7fb05d8e8000-7fb05d8f2000 r-xp 00000000 08:03 2859279  /usr/lib64/
> libXcursor.so.1.0.2
> 7fb05d8f2000-7fb05daf1000 ---p 0000a000 08:03 2859279  /usr/lib64/
> libXcursor.so.1.0.2
> 7fb05daf1000-7fb05daf2000 r--p 00009000 08:03 2859279  /usr/lib64/
> libXcursor.so.1.0.2
> 7fb05daf2000-7fb05daf3000 rw-p 0000a000 08:03 2859279  /usr/lib64/
> libXcursor.so.1.0.2
> 7fb05daf3000-7fb05dafe000 r-xp 00000000 08:03 3244057  /lib64/
> libnss_files-2.11.1.so
> 7fb05dafe000-7fb05dcfe000 ---p 0000b000 08:03 3244057  /lib64/
> libnss_files-2.11.1.so
> 7fb05dcfe000-7fb05dcff000 r--p 0000b000 08:03 3244057  /lib64/
> libnss_files-2.11.1.so
> 7fb05dcff000-7fb05dd00000 rw-p 0000c000 08:03 3244057  /lib64/
> libnss_files-2.11.1.so
> 7fb05dd00000-7fb05dd02000 r-xp 00000000 08:03 3575339  /usr/lib64/
> libXau.so.6.0.0
> 7fb05dd02000-7fb05df02000 ---p 00002000 08:03 3575339  /usr/lib64/
> libXau.so.6.0.0
> 7fb05df02000-7fb05df03000 r--p 00002000 08:03 3575339  /usr/lib64/
> libXau.so.6.0.0
> 7fb05df03000-7fb05df04000 rw-p 00003000 08:03 3575339  /usr/lib64/
> libXau.so.6.0.0
> 7fb05df04000-7fb05df1f000 r-xp 00000000 08:03 3575639  /usr/lib64/
> libxcb.so.1.0.0
> 7fb05df1f000-7fb05e11e000 ---p 0001b000 08:03 3575639  /usr/lib64/
> libxcb.so.1.0.0
> 7fb05e11e000-7fb05e11f000 r--p 0001a000 08:03 3575639  /usr/lib64/
> libxcb.so.1.0.0
> 7fb05e11f000-7fb05e120000 rw-p 0001b000 08:03 3575639  /usr/lib64/
> libxcb.so.1.0.0
> 7fb05e120000-7fb05e121000 r-xp 00000000 08:03 3575629  /usr/lib64/
> libxcb-xlib.so.0.0.0
> 7fb05e121000-7fb05e320000 ---p 00001000 08:03 3575629  /usr/lib64/
> libxcb-xlib.so.0.0.0
> 7fb05e320000-7fb05e321000 r--p 00000000 08:03 3575629  /usr/lib64/
> libxcb-xlib.so.0.0.0
> 7fb05e321000-7fb05e322000 rw-p 00001000 08:03 3575629  /usr/lib64/
> libxcb-xlib.so.0.0.0
> 7fb05e322000-7fb05e326000 r-xp 00000000 08:03 3244146  /lib64/
> libuuid.so.1.3.0
> 7fb05e326000-7fb05e525000 ---p 00004000 08:03 3244146  /lib64/
> libuuid.so.1.3.0
> 7fb05e525000-7fb05e526000 r--p 00003000 08:03 3244146  /lib64/
> libuuid.so.1.3.0
> 7fb05e526000-7fb05e527000 rw-p 00004000 08:03 3244146  /lib64/
> libuuid.so.1.3.0
> 7fb05e527000-7fb05e67c000 r-xp 00000000 08:03 3244040  /lib64/
> libc-2.11.1.so
> 7fb05e67c000-7fb05e87b000 ---p 00155000 08:03 3244040  /lib64/
> libc-2.11.1.so
> 7fb05e87b000-7fb05e87f000 r--p 00154000 08:03 3244040  /lib64/
> libc-2.11.1.so
> 7fb05e87f000-7fb05e880000 rw-p 00158000 08:03 3244040  /lib64/
> libc-2.11.1.so
> 7fb05e880000-7fb05e885000 rw-p 00000000 00:00 0
> 7fb05e885000-7fb05e8c3000 r-xp 00000000 08:03 3244109  /lib64/
> libncurses.so.5.6
> 7fb05e8c3000-7fb05eac3000 ---p 0003e000 08:03 3244109  /lib64/
> libncurses.so.5.6
> 7fb05eac3000-7fb05eac7000 r--p 0003e000 08:03 3244109  /lib64/
> libncurses.so.5.6
> 7fb05eac7000-7fb05eacd000 rw-p 00042000 08:03 3244109  /lib64/
> libncurses.so.5.6
> 7fb05eacd000-7fb05eb22000 r-xp 00000000 08:03 3244048  /lib64/
> libm-2.11.1.so
> 7fb05eb22000-7fb05ed21000 ---p 00055000 08:03 3244048  /lib64/
> libm-2.11.1.so
> 7fb05ed21000-7fb05ed22000 r--p 00054000 08:03 3244048  /lib64/
> libm-2.11.1.so
> 7fb05ed22000-7fb05ed23000 rw-p 00055000 08:03 3244048  /lib64/
> libm-2.11.1.so
> 7fb05ed23000-7fb05ed25000 r-xp 00000000 08:03 3244046  /lib64/
> libdl-2.11.1.so
> 7fb05ed25000-7fb05ef25000 ---p 00002000 08:03 3244046  /lib64/
> libdl-2.11.1.so
> 7fb05ef25000-7fb05ef26000 r--p 00002000 08:03 3244046  /lib64/
> libdl-2.11.1.so
> 7fb05ef26000-7fb05ef27000 rw-p 00003000 08:03 3244046  /lib64/
> libdl-2.11.1.so
> 7fb05ef27000-7fb05f05e000 r-xp 00000000 08:03 2859042  /usr/lib64/
> libX11.so.6.2.0
> 7fb05f05e000-7fb05f25e000 ---p 00137000 08:03 2859042  /usr/lib64/
> libX11.so.6.2.0
> 7fb05f25e000-7fb05f25f000 r--p 00137000 08:03 2859042  /usr/lib64/
> libX11.so.6.2.0
> 7fb05f25f000-7fb05f264000 rw-p 00138000 08:03 2859042  /usr/lib64/
> libX11.so.6.2.0Abort
>
> So I would like to compile the source to see if it can be better
>
> When I do so, I have the error message
> In file included from ../../sac-101.3b/src/bbs/setbbv.c:12:
> ../../sac-101.3b/inc/co.h:40: error: conflicting types for 'getline'
> /usr/include/stdio.h:653: error: previous declaration of 'getline'
> was here
> make[1]: *** [bbs/setbbv.o] Error 1
> make: *** [all-recursive] Error 1
>
> Is that any solution to go head....
>
> Thanks
>
> Anne
> --
> Anne Deschamps
> G?oazur/CNRS
> B?t 3, 250 rue A. Einstein
> 06560 Sophia Antipolis
> tel: +33 4 92 94 26 16
> secr?tariat : +33 4 92 94 26 02
> _______________________________________________
> sac-help mailing list
> sac-help at iris.washington.edu
> http://www.iris.washington.edu/mailman/listinfo/sac-help
>
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