[SAC-HELP] glibc detected (when trying to get polezeros using rdseed)

Thu Dec 22 10:59:49 PST 2011

Hi Arthur and Rob,

Thanks for the replies. No need to address this now.

First, I downloaded sac-101.5 and reproduced the problem I mentioned: the
gclib exit error and message. My inputs into rdseedv5.1 are "d", "y" for
polezeros, "3" to check all, "y" to extract response," and the rest
defaults. If you do not request polezeros, there is no error message or
exit. If you do request polezeros, there is an error message, but it
appears that the files are generated (which is good!). (The exit might be
an issue if you are running a script with multiple files.)

I tried recompiling rdseed and did notice this warning (among others):

cc -I../Include -O -m64    -c -o output_sac.o output_sac.c
output_sac.c: In function ‘output_sac’:
output_sac.c:274: warning: assignment makes pointer from integer without a
cast
output_sac.c: In function ‘write_out_PnZs’:
output_sac.c:1521: warning: assignment makes pointer from integer without a
cast

Anyway, there is no urgency to this. I will try things out with rdseedv5.2
and can try out beta versions in the mean time, if you want.

Enjoy the holidays. Today is 3 seconds longer than yesterday up here in
Fairbanks, so the days are getting longer!

Carl

On Thu, Dec 22, 2011 at 7:44 AM, Robert Casey <rob at iris.washington.edu>wrote:

>
> Hi Carl-
>
> If the issue is with rdseed 5.1, then that is a problem that IRIS DMC has
> to address.  Can you send us a copy/paste of the input text to rdseed that
> you used, so that we can reproduce the error?  This will probably not get
> resolved until the first couple of weeks of January, since most of the DMC
> staff is out on holiday.  If I get any ideas about what's wrong, though,
> I'll contact you.
>
> Thanks for letting us know about this issue.  As Arthur indicated, we have
> a v5.2 coming out that has some bug fixes, but I am not certain that this
> issue has been examined or resolved, so it will be good for us to address
> this while we still have the release candidate on the workbench.
>
> Happy Holidays,
>
> -Rob
>
>
> On Dec 21, 2011, at 6:37 PM, Carl Tape wrote:
>
> Dear SAC-help:
>
> I just downloaded rdseedv5.1 and tried to extract waveforms, response, and
> PZ files for a file from IRIS. I got the error and behavior mentioned below
> by Anne Deschamps. I have sac 101.5 installed (though the pre-release
> version), with linux opensuse 11.3, 64-bit. I do know that it only happens
> if you ask to produce polezero files -- for waveforms or response files, no
> error.
>
> The exit looks like this:
>
> ...
> Writing IU.YSS.00.LHZ,  3600 samples (binary), starting 2004,361
> 00:55:50.7856 UT
> *** glibc detected *** rdseed: free(): invalid pointer: 0x000000000043b845
> ***
> ======= Backtrace: =========
> /lib64/libc.so.6(+0x73286)[0x7f10ed8d3286]
> /lib64/libc.so.6(cfree+0x6c)[0x7f10ed8d802c]
> rdseed[0x42a55b]
> ...
>
> It sounded like I should not expect to see this with the latest version of
> sac.
>
> Thanks,
> Carl Tape
>
> ---------- Forwarded message ----------
> From: <sac-help-request at iris.washington.edu>
> Date: Wed, Sep 7, 2011 at 10:46 AM
> Subject: sac-help Digest, Vol 72, Issue 2
> To: sac-help at iris.washington.edu
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 2 Sep 2011 15:24:35 -0400
> From: Brian Savage <savage at uri.edu>
> Subject: Re: [SAC-HELP] compiling sac_v101.3 on linux suse 64bits
> To: SAC HELP <sac-help at iris.washington.edu>
> Cc: Anne Deschamps <deschamps at geoazur.unice.fr>
> Message-ID: <65AEA0A5-FEAF-407E-B2A3-1CF0C693E2A2 at uri.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed; delsp=yes
>
> Anne,
>
> I would suggest getting version 101.4.  The getline issue was fixed in
> this version.
>
> The message you reported comes from the glibc and is indicating a
> minor error in the program. These kinds of messages have shown up
> before and should be fixed.
>
> See
> http://www.iris.washington.edu/pipermail/sac-help/2009-August/000593.html
> on how to make the message go away.
>
> If you still see this message when using 101.4, I would like to know
> the set of commands you issue before exiting the program so this
> problem can be fixed.
>
> Brian Savage
> savage at uri.edu
>
> On Sep 1, 2011, at 1:56 PM, Anne Deschamps wrote:
>
> > Hi
> >
> > when we use the compile linux version (64bits) all is OK except that
> > at the end, when we leave the programm we have this error message
> >
> > *** glibc detected *** sac: free(): invalid next size (fast):
> > 0x00000000009fc570 ***
> > ======= Backtrace: =========
> > /lib64/libc.so.6(+0x75018)[0x7fb05e59c018]
> > /lib64/libc.so.6(cfree+0x6c)[0x7fb05e5a0fec]
> > sac[0x5b27dd]
> > sac[0x5b2cd9]
> > sac[0x5a33c0]
> > sac[0x40dacf]
> > sac[0x43cf72]
> > sac[0x4128c3]
> > sac[0x40b1b0]
> > sac[0x40555c]
> > /lib64/libc.so.6(__libc_start_main+0xe6)[0x7fb05e545bc6]
> > sac[0x404efa]
> > ======= Memory map: ========
> > 00400000-00604000 r-xp 00000000 00:14 1084254  /usr/local/soft_sismo/
> > sac/sac_v101.3/bin/sac
> > 00703000-0072a000 rw-p 00203000 00:14 1084254  /usr/local/soft_sismo/
> > sac/sac_v101.3/bin/sac
> > 0072a000-00a2b000 rw-p 00000000 00:00 0  [heap]
> > 7fb058000000-7fb058021000 rw-p 00000000 00:00 0
> > 7fb058021000-7fb05c000000 ---p 00000000 00:00 0
> > 7fb05d2c1000-7fb05d2d7000 r-xp 00000000 08:03 3244152  /lib64/
> > libgcc_s.so.1
> > 7fb05d2d7000-7fb05d4d6000 ---p 00016000 08:03 3244152  /lib64/
> > libgcc_s.so.1
> > 7fb05d4d6000-7fb05d4d7000 r--p 00015000 08:03 3244152  /lib64/
> > libgcc_s.so.1
> > 7fb05d4d7000-7fb05d4d8000 rw-p 00016000 08:03 3244152  /lib64/
> > libgcc_s.so.1
> > 7fb05d4d8000-7fb05d4dd000 r-xp 00000000 08:03 2859135  /usr/lib64/
> > libXfixes.so.3.1.0
> > 7fb05d4dd000-7fb05d6dc000 ---p 00005000 08:03 2859135  /usr/lib64/
> > libXfixes.so.3.1.0
> > 7fb05d6dc000-7fb05d6dd000 r--p 00004000 08:03 2859135  /usr/lib64/
> > libXfixes.so.3.1.0
> > 7fb05d6dd000-7fb05d6de000 rw-p 00005000 08:03 2859135  /usr/lib64/
> > libXfixes.so.3.1.0
> > 7fb05d6de000-7fb05d6e7000 r-xp 00000000 08:03 2859133  /usr/lib64/
> > libXrender.so.1.3.0
> > 7fb05d6e7000-7fb05d8e6000 ---p 00009000 08:03 2859133  /usr/lib64/
> > libXrender.so.1.3.0
> > 7fb05d8e6000-7fb05d8e7000 r--p 00008000 08:03 2859133  /usr/lib64/
> > libXrender.so.1.3.0
> > 7fb05d8e7000-7fb05d8e8000 rw-p 00009000 08:03 2859133  /usr/lib64/
> > libXrender.so.1.3.0
> > 7fb05d8e8000-7fb05d8f2000 r-xp 00000000 08:03 2859279  /usr/lib64/
> > libXcursor.so.1.0.2
> > 7fb05d8f2000-7fb05daf1000 ---p 0000a000 08:03 2859279  /usr/lib64/
> > libXcursor.so.1.0.2
> > 7fb05daf1000-7fb05daf2000 r--p 00009000 08:03 2859279  /usr/lib64/
> > libXcursor.so.1.0.2
> > 7fb05daf2000-7fb05daf3000 rw-p 0000a000 08:03 2859279  /usr/lib64/
> > libXcursor.so.1.0.2
> > 7fb05daf3000-7fb05dafe000 r-xp 00000000 08:03 3244057  /lib64/
> > libnss_files-2.11.1.so
> > 7fb05dafe000-7fb05dcfe000 ---p 0000b000 08:03 3244057  /lib64/
> > libnss_files-2.11.1.so
> > 7fb05dcfe000-7fb05dcff000 r--p 0000b000 08:03 3244057  /lib64/
> > libnss_files-2.11.1.so
> > 7fb05dcff000-7fb05dd00000 rw-p 0000c000 08:03 3244057  /lib64/
> > libnss_files-2.11.1.so
> > 7fb05dd00000-7fb05dd02000 r-xp 00000000 08:03 3575339  /usr/lib64/
> > libXau.so.6.0.0
> > 7fb05dd02000-7fb05df02000 ---p 00002000 08:03 3575339  /usr/lib64/
> > libXau.so.6.0.0
> > 7fb05df02000-7fb05df03000 r--p 00002000 08:03 3575339  /usr/lib64/
> > libXau.so.6.0.0
> > 7fb05df03000-7fb05df04000 rw-p 00003000 08:03 3575339  /usr/lib64/
> > libXau.so.6.0.0
> > 7fb05df04000-7fb05df1f000 r-xp 00000000 08:03 3575639  /usr/lib64/
> > libxcb.so.1.0.0
> > 7fb05df1f000-7fb05e11e000 ---p 0001b000 08:03 3575639  /usr/lib64/
> > libxcb.so.1.0.0
> > 7fb05e11e000-7fb05e11f000 r--p 0001a000 08:03 3575639  /usr/lib64/
> > libxcb.so.1.0.0
> > 7fb05e11f000-7fb05e120000 rw-p 0001b000 08:03 3575639  /usr/lib64/
> > libxcb.so.1.0.0
> > 7fb05e120000-7fb05e121000 r-xp 00000000 08:03 3575629  /usr/lib64/
> > libxcb-xlib.so.0.0.0
> > 7fb05e121000-7fb05e320000 ---p 00001000 08:03 3575629  /usr/lib64/
> > libxcb-xlib.so.0.0.0
> > 7fb05e320000-7fb05e321000 r--p 00000000 08:03 3575629  /usr/lib64/
> > libxcb-xlib.so.0.0.0
> > 7fb05e321000-7fb05e322000 rw-p 00001000 08:03 3575629  /usr/lib64/
> > libxcb-xlib.so.0.0.0
> > 7fb05e322000-7fb05e326000 r-xp 00000000 08:03 3244146  /lib64/
> > libuuid.so.1.3.0
> > 7fb05e326000-7fb05e525000 ---p 00004000 08:03 3244146  /lib64/
> > libuuid.so.1.3.0
> > 7fb05e525000-7fb05e526000 r--p 00003000 08:03 3244146  /lib64/
> > libuuid.so.1.3.0
> > 7fb05e526000-7fb05e527000 rw-p 00004000 08:03 3244146  /lib64/
> > libuuid.so.1.3.0
> > 7fb05e527000-7fb05e67c000 r-xp 00000000 08:03 3244040  /lib64/
> > libc-2.11.1.so
> > 7fb05e67c000-7fb05e87b000 ---p 00155000 08:03 3244040  /lib64/
> > libc-2.11.1.so
> > 7fb05e87b000-7fb05e87f000 r--p 00154000 08:03 3244040  /lib64/
> > libc-2.11.1.so
> > 7fb05e87f000-7fb05e880000 rw-p 00158000 08:03 3244040  /lib64/
> > libc-2.11.1.so
> > 7fb05e880000-7fb05e885000 rw-p 00000000 00:00 0
> > 7fb05e885000-7fb05e8c3000 r-xp 00000000 08:03 3244109  /lib64/
> > libncurses.so.5.6
> > 7fb05e8c3000-7fb05eac3000 ---p 0003e000 08:03 3244109  /lib64/
> > libncurses.so.5.6
> > 7fb05eac3000-7fb05eac7000 r--p 0003e000 08:03 3244109  /lib64/
> > libncurses.so.5.6
> > 7fb05eac7000-7fb05eacd000 rw-p 00042000 08:03 3244109  /lib64/
> > libncurses.so.5.6
> > 7fb05eacd000-7fb05eb22000 r-xp 00000000 08:03 3244048  /lib64/
> > libm-2.11.1.so
> > 7fb05eb22000-7fb05ed21000 ---p 00055000 08:03 3244048  /lib64/
> > libm-2.11.1.so
> > 7fb05ed21000-7fb05ed22000 r--p 00054000 08:03 3244048  /lib64/
> > libm-2.11.1.so
> > 7fb05ed22000-7fb05ed23000 rw-p 00055000 08:03 3244048  /lib64/
> > libm-2.11.1.so
> > 7fb05ed23000-7fb05ed25000 r-xp 00000000 08:03 3244046  /lib64/
> > libdl-2.11.1.so
> > 7fb05ed25000-7fb05ef25000 ---p 00002000 08:03 3244046  /lib64/
> > libdl-2.11.1.so
> > 7fb05ef25000-7fb05ef26000 r--p 00002000 08:03 3244046  /lib64/
> > libdl-2.11.1.so
> > 7fb05ef26000-7fb05ef27000 rw-p 00003000 08:03 3244046  /lib64/
> > libdl-2.11.1.so
> > 7fb05ef27000-7fb05f05e000 r-xp 00000000 08:03 2859042  /usr/lib64/
> > libX11.so.6.2.0
> > 7fb05f05e000-7fb05f25e000 ---p 00137000 08:03 2859042  /usr/lib64/
> > libX11.so.6.2.0
> > 7fb05f25e000-7fb05f25f000 r--p 00137000 08:03 2859042  /usr/lib64/
> > libX11.so.6.2.0
> > 7fb05f25f000-7fb05f264000 rw-p 00138000 08:03 2859042  /usr/lib64/
> > libX11.so.6.2.0Abort
> >
> > So I would like to compile the source to see if it can be better
> >
> > When I do so, I have the error message
> > In file included from ../../sac-101.3b/src/bbs/setbbv.c:12:
> > ../../sac-101.3b/inc/co.h:40: error: conflicting types for 'getline'
> > /usr/include/stdio.h:653: error: previous declaration of 'getline'
> > was here
> > make[1]: *** [bbs/setbbv.o] Error 1
> > make: *** [all-recursive] Error 1
> >
> > Is that any solution to go head....
> >
> > Thanks
> >
> > Anne
> > --
> > Anne Deschamps
> > G?oazur/CNRS
> > B?t 3, 250 rue A. Einstein
> > 06560 Sophia Antipolis
> > tel: +33 4 92 94 26 16
> > secr?tariat : +33 4 92 94 26 02
> > _______________________________________________
> > sac-help mailing list
> > sac-help at iris.washington.edu
> > http://www.iris.washington.edu/mailman/listinfo/sac-help
> >
>
> _______________________________________________
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>
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